Gene

Vcarteri Vocar.0035s0052

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Gene information
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This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name Chrom. Start End Source Assembly Species Details

Vcarteri_Vocar.0035s0052
Vocar.0035s0052
scaffold_35 437190 438155 Phytozome v2.1 Volvox_carteri
Coding?
No


Transcript features
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This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name Confidence Pre-miRNA Length Sequence Details

Vcarteri_Vocar.0035s0052.1
Vocar.0035s0052.1
PAC:32896870
High No 966
Coding potential...
Type: noncoding Potential: -1.345
Folding energies...
MFEI: -30.383 AMFE: -0.614
GC content
%: 49.482


Gene models
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Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).

Vocar.0035s0052.png