Gene

Zmays GRMZM5G861402

From GreeNC

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Gene information
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This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name Chrom. Start End Source Assembly Species Details

Zmays_GRMZM5G861402
GRMZM5G861402
6 93655383 93655718 Phytozome 6a Zea_mays
Coding?
No


Transcript features
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This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name Confidence Pre-miRNA Length Sequence Details

Zmays_GRMZM5G861402_T01
GRMZM5G861402_T01
PAC:31025473
Low No 336
Coding potential...
Type: noncoding Potential: -0.919
Folding energies...
MFEI: -39.018 AMFE: -0.646
GC content
%: 60.417


Matches to external databases
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The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.

Transcript alias Database Version Hit Evalue
Zmays_GRMZM5G861402_T01  SwissProt 2015-06-01 Q8L765 2.0e-21


Gene models
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Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).

GRMZM5G861402.png