Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
---|---|---|---|---|---|---|---|
Acoerulea_Aquca_036_00155 Aquca_036_00155 |
scaffold_36 | 2277640 | 2279459 | Phytozome | [[Species:|]]"Species:" cannot be used as a page name in this wiki. | Coding? No |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
---|---|---|---|---|---|
Acoerulea_Aquca_036_00155.1 Aquca_036_00155.1 PAC:22055214 |
Low | No | 767 | Get ORF Coding potential... Type: noncoding Potential: -0.435 Folding energies... MFEI: -22.699 AMFE: -0.620 GC content %: 36.636 | |
Acoerulea_Aquca_036_00155.2 Aquca_036_00155.2 PAC:22055215 |
Low | No | 988 | Get ORF Coding potential... Type: noncoding Potential: -0.170 Folding energies... MFEI: -24.322 AMFE: -0.660 GC content %: 36.842 |
Transcript alias | Database | Version | Hit | Evalue |
---|---|---|---|---|
Acoerulea_Aquca_036_00155.1 | SwissProt | 2015-06-01 | Q40256 | 5.0e-9 |
Acoerulea_Aquca_036_00155.2 | SwissProt | 2015-06-01 | Q40256 | 4.0e-12 |