GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Acoerulea_Aquca_038_00108 Aquca_038_00108	scaffold_38	1246588	1248767	Phytozome		[[Species:|]]"Species:" cannot be used as a page name in this wiki.	Coding? Yes

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Acoerulea_Aquca_038_00108.2 Aquca_038_00108.2 PAC:22026731	Low	No	1198		Get ORF Coding potential... Type: coding Potential: 0.441 Folding energies... MFEI: -20.968 AMFE: -0.647 GC content %: 32.387
Acoerulea_Aquca_038_00108.3 Aquca_038_00108.3 PAC:22026732	High	No	822		Get ORF Coding potential... Type: noncoding Potential: -0.023 Folding energies... MFEI: -21.800 AMFE: -0.599 GC content %: 36.375

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).