Gene
Acoerulea Aquca 049 00052
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
|---|---|---|---|---|---|---|---|
| Acoerulea_Aquca_049_00052 Aquca_049_00052 |
scaffold_49 | 607270 | 614472 | Phytozome | [[Species:|]]"Species:" cannot be used as a page name in this wiki. | Coding? No |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
|---|---|---|---|---|---|
| Acoerulea_Aquca_049_00052.1 Aquca_049_00052.1 PAC:22044785 |
High | No | 922 | Get ORF Coding potential... Type: noncoding Potential: -1.067 Folding energies... MFEI: -26.497 AMFE: -0.658 GC content %: 40.239 | |
| Acoerulea_Aquca_049_00052.2 Aquca_049_00052.2 PAC:22044784 |
High | No | 869 | Get ORF Coding potential... Type: noncoding Potential: -1.055 Folding energies... MFEI: -25.259 AMFE: -0.634 GC content %: 39.816 | |
| Acoerulea_Aquca_049_00052.3 Aquca_049_00052.3 PAC:22044786 |
High | No | 835 | Get ORF Coding potential... Type: noncoding Potential: -1.046 Folding energies... MFEI: -24.946 AMFE: -0.626 GC content %: 39.880 | |
| Acoerulea_Aquca_049_00052.4 Aquca_049_00052.4 PAC:22044787 |
High | No | 850 | Get ORF Coding potential... Type: noncoding Potential: -1.050 Folding energies... MFEI: -24.965 AMFE: -0.626 GC content %: 39.882 | |
| Acoerulea_Aquca_049_00052.5 Aquca_049_00052.5 PAC:22044788 |
High | No | 851 | Get ORF Coding potential... Type: noncoding Potential: -1.051 Folding energies... MFEI: -25.429 AMFE: -0.638 GC content %: 39.835 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
