GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Acoerulea_Aquca_049_00192 Aquca_049_00192	scaffold_49	1431036	1431638	Phytozome		[[Species:|]]"Species:" cannot be used as a page name in this wiki.	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Acoerulea_Aquca_049_00192.1 Aquca_049_00192.1 PAC:22044565	High	No	514		Get ORF Coding potential... Type: noncoding Potential: -1.049 Folding energies... MFEI: -21.440 AMFE: -0.616 GC content %: 34.825
Acoerulea_Aquca_049_00192.2 Aquca_049_00192.2 PAC:22044566	High	No	513		Get ORF Coding potential... Type: noncoding Potential: -1.048 Folding energies... MFEI: -21.481 AMFE: -0.616 GC content %: 34.893

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).