GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Acoerulea_Aquca_050_00054 Aquca_050_00054	scaffold_50	1576625	1578129	Phytozome		[[Species:|]]"Species:" cannot be used as a page name in this wiki.	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Acoerulea_Aquca_050_00054.1 Aquca_050_00054.1 PAC:22033183	High	No	1007		Get ORF Coding potential... Type: noncoding Potential: -1.087 Folding energies... MFEI: -22.781 AMFE: -0.608 GC content %: 37.438
Acoerulea_Aquca_050_00054.2 Aquca_050_00054.2 PAC:22033184	High	No	681		Get ORF Coding potential... Type: noncoding Potential: -1.144 Folding energies... MFEI: -23.847 AMFE: -0.599 GC content %: 39.794

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).