GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Acoerulea_Aquca_051_00036 Aquca_051_00036	scaffold_51	686488	687567	Phytozome		[[Species:|]]"Species:" cannot be used as a page name in this wiki.	Coding? Yes

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Acoerulea_Aquca_051_00036.3 Aquca_051_00036.3 PAC:22046108	High	No	920		Get ORF Coding potential... Type: noncoding Potential: -0.742 Folding energies... MFEI: -20.696 AMFE: -0.593 GC content %: 34.891
Acoerulea_Aquca_051_00036.4 Aquca_051_00036.4 PAC:22046109	High	No	934		Get ORF Coding potential... Type: noncoding Potential: -0.902 Folding energies... MFEI: -21.403 AMFE: -0.639 GC content %: 33.512

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).