GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Acoerulea_Aquca_058_00119 Aquca_058_00119	scaffold_58	737271	738905	Phytozome		[[Species:|]]"Species:" cannot be used as a page name in this wiki.	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Acoerulea_Aquca_058_00119.1 Aquca_058_00119.1 PAC:22050940	High	No	1368		Get ORF Coding potential... Type: noncoding Potential: -0.989 Folding energies... MFEI: -26.937 AMFE: -0.703 GC content %: 38.304
Acoerulea_Aquca_058_00119.2 Aquca_058_00119.2 PAC:22050941	High	No	1310		Get ORF Coding potential... Type: noncoding Potential: -1.230 Folding energies... MFEI: -26.435 AMFE: -0.693 GC content %: 38.168

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).