GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Acoerulea_Aquca_061_00009 Aquca_061_00009	scaffold_61	59336	60140	Phytozome		[[Species:|]]"Species:" cannot be used as a page name in this wiki.	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Acoerulea_Aquca_061_00009.1 Aquca_061_00009.1 PAC:22060838	High	No	575		Get ORF Coding potential... Type: noncoding Potential: -0.360 Folding energies... MFEI: -21.113 AMFE: -0.528 GC content %: 40.000
Acoerulea_Aquca_061_00009.2 Aquca_061_00009.2 PAC:22060839	High	No	620		Get ORF Coding potential... Type: noncoding Potential: -0.712 Folding energies... MFEI: -20.726 AMFE: -0.520 GC content %: 39.839

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).