GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Acoerulea_Aquca_072_00156 Aquca_072_00156	scaffold_72	1089180	1090284	Phytozome		[[Species:|]]"Species:" cannot be used as a page name in this wiki.	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Acoerulea_Aquca_072_00156.1 Aquca_072_00156.1 PAC:22041436	High	No	622		Get ORF Coding potential... Type: noncoding Potential: -0.513 Folding energies... MFEI: -23.842 AMFE: -0.628 GC content %: 37.942
Acoerulea_Aquca_072_00156.2 Aquca_072_00156.2 PAC:22041437	High	No	645		Get ORF Coding potential... Type: noncoding Potential: -0.480 Folding energies... MFEI: -22.093 AMFE: -0.606 GC content %: 36.434

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).