GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Acoerulea_Aquca_074_00095 Aquca_074_00095	scaffold_74	1122248	1127030	Phytozome		[[Species:|]]"Species:" cannot be used as a page name in this wiki.	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Acoerulea_Aquca_074_00095.1 Aquca_074_00095.1 PAC:22063876	High	No	571		Get ORF Coding potential... Type: noncoding Potential: -0.975 Folding energies... MFEI: -21.629 AMFE: -0.618 GC content %: 35.026
Acoerulea_Aquca_074_00095.2 Aquca_074_00095.2 PAC:22063877	High	No	316		Get ORF Coding potential... Type: noncoding Potential: -1.074 Folding energies... MFEI: -18.259 AMFE: -0.520 GC content %: 35.127

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).