GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Acoerulea_Aquca_118_00028 Aquca_118_00028	scaffold_118	193292	195728	Phytozome		[[Species:|]]"Species:" cannot be used as a page name in this wiki.	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Acoerulea_Aquca_118_00028.1 Aquca_118_00028.1 PAC:22042483	High	No	993		Get ORF Coding potential... Type: noncoding Potential: -0.481 Folding energies... MFEI: -22.679 AMFE: -0.591 GC content %: 38.369
Acoerulea_Aquca_118_00028.2 Aquca_118_00028.2 PAC:22042482	High	No	1018		Get ORF Coding potential... Type: noncoding Potential: -0.487 Folding energies... MFEI: -23.379 AMFE: -0.612 GC content %: 38.212
Acoerulea_Aquca_118_00028.3 Aquca_118_00028.3 PAC:22042485	High	No	655		Get ORF Coding potential... Type: noncoding Potential: -0.375 Folding energies... MFEI: -23.191 AMFE: -0.600 GC content %: 38.626
Acoerulea_Aquca_118_00028.4 Aquca_118_00028.4 PAC:22042484	High	No	893		Get ORF Coding potential... Type: noncoding Potential: -0.456 Folding energies... MFEI: -24.177 AMFE: -0.629 GC content %: 38.410

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).