GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Acoerulea_Aquca_123_00016 Aquca_123_00016	scaffold_123	128348	133160	Phytozome		[[Species:|]]"Species:" cannot be used as a page name in this wiki.	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Acoerulea_Aquca_123_00016.1 Aquca_123_00016.1 PAC:22040050	High	No	689		Get ORF Coding potential... Type: noncoding Potential: -0.712 Folding energies... MFEI: -24.296 AMFE: -0.634 GC content %: 38.316
Acoerulea_Aquca_123_00016.2 Aquca_123_00016.2 PAC:22040051	High	No	670		Get ORF Coding potential... Type: noncoding Potential: -0.704 Folding energies... MFEI: -24.910 AMFE: -0.644 GC content %: 38.657

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).