GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Acoerulea_Aquca_295_00001 Aquca_295_00001	scaffold_295	10737	12609	Phytozome		[[Species:|]]"Species:" cannot be used as a page name in this wiki.	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Acoerulea_Aquca_295_00001.1 Aquca_295_00001.1 PAC:22050895	High	No	484		Get ORF Coding potential... Type: noncoding Potential: -0.788 Folding energies... MFEI: -23.554 AMFE: -0.603 GC content %: 39.050
Acoerulea_Aquca_295_00001.2 Aquca_295_00001.2 PAC:22050896	High	No	537		Get ORF Coding potential... Type: noncoding Potential: -0.890 Folding energies... MFEI: -25.773 AMFE: -0.623 GC content %: 41.341

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).