GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Acoerulea_Aquca_375_00001 Aquca_375_00001	scaffold_375	3024	6009	Phytozome		[[Species:|]]"Species:" cannot be used as a page name in this wiki.	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Acoerulea_Aquca_375_00001.1 Aquca_375_00001.1 PAC:22058146	High	No	876		Get ORF Coding potential... Type: noncoding Potential: -0.538 Folding energies... MFEI: -23.733 AMFE: -0.677 GC content %: 35.046
Acoerulea_Aquca_375_00001.2 Aquca_375_00001.2 PAC:22058147	High	No	801		Get ORF Coding potential... Type: noncoding Potential: -0.514 Folding energies... MFEI: -22.472 AMFE: -0.632 GC content %: 35.581

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).