GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Ahalleri_Araha.0049s0010 Araha.0049s0010	Scaffold49	29414	30107	Phytozome		[[Species:|]]"Species:" cannot be used as a page name in this wiki.	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Ahalleri_Araha.0049s0010.1 Araha.0049s0010.1 PAC:28845949	High	No	694		Get ORF Coding potential... Type: noncoding Potential: -0.884 Folding energies... MFEI: -24.726 AMFE: -0.650 GC content %: 38.040
Ahalleri_Araha.0049s0010.2 Araha.0049s0010.2 PAC:28845948	High	No	602		Get ORF Coding potential... Type: noncoding Potential: -0.849 Folding energies... MFEI: -25.399 AMFE: -0.640 GC content %: 39.701

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).