Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
---|---|---|---|---|---|---|---|
Ahalleri_Araha.10230s0003 Araha.10230s0003 |
Scaffold10230 | 12727 | 13363 | Phytozome | [[Species:|]]"Species:" cannot be used as a page name in this wiki. | Coding? No |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
---|---|---|---|---|---|
Ahalleri_Araha.10230s0003.1 Araha.10230s0003.1 PAC:28850921 |
Low | No | 450 | Get ORF Coding potential... Type: noncoding Potential: -0.059 Folding energies... MFEI: -26.911 AMFE: -0.612 GC content %: 44.000 | |
Ahalleri_Araha.10230s0003.2 Araha.10230s0003.2 PAC:28850922 |
Low | No | 447 | Get ORF Coding potential... Type: noncoding Potential: -0.103 Folding energies... MFEI: -27.047 AMFE: -0.617 GC content %: 43.848 |
Transcript alias | Database | Version | Hit | Evalue |
---|---|---|---|---|
Ahalleri_Araha.10230s0003.1 | SwissProt | 2015-06-01 | F4IQJ4 | 2.0e-28 |
Ahalleri_Araha.10230s0003.2 | SwissProt | 2015-06-01 | F4IQJ4 | 6.0e-26 |