Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
---|---|---|---|---|---|---|---|
Ahalleri_Araha.1212s0003 Araha.1212s0003 |
Scaffold1212 | 31151 | 33098 | Phytozome | [[Species:|]]"Species:" cannot be used as a page name in this wiki. | Coding? No |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
---|---|---|---|---|---|
Ahalleri_Araha.1212s0003.1 Araha.1212s0003.1 PAC:28842506 |
Low | No | 1161 | Get ORF Coding potential... Type: noncoding Potential: -1.104 Folding energies... MFEI: -20.560 AMFE: -0.582 GC content %: 35.314 | |
Ahalleri_Araha.1212s0003.2 Araha.1212s0003.2 PAC:28842507 |
Low | No | 1281 | Get ORF Coding potential... Type: noncoding Potential: -1.276 Folding energies... MFEI: -20.788 AMFE: -0.587 GC content %: 35.441 |
Transcript alias | Database | Version | Hit | Evalue |
---|---|---|---|---|
Ahalleri_Araha.1212s0003.1 | RepBase (RepeatMasker) | 2014-01-31 | ATIS112A | |
Ahalleri_Araha.1212s0003.2 | RepBase (RepeatMasker) | 2014-01-31 | ATIS112A |