Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
---|---|---|---|---|---|---|---|
Ahalleri_Araha.32468s0001 Araha.32468s0001 |
Scaffold32468 | 265 | 2060 | Phytozome | [[Species:|]]"Species:" cannot be used as a page name in this wiki. | Coding? No |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
---|---|---|---|---|---|
Ahalleri_Araha.32468s0001.1 Araha.32468s0001.1 PAC:28844396 |
Low | No | 1058 | Get ORF Coding potential... Type: noncoding Potential: -0.634 Folding energies... MFEI: -19.527 AMFE: -0.569 GC content %: 34.310 | |
Ahalleri_Araha.32468s0001.2 Araha.32468s0001.2 PAC:28844397 |
Low | No | 977 | Get ORF Coding potential... Type: noncoding Potential: -0.616 Folding energies... MFEI: -19.539 AMFE: -0.566 GC content %: 34.493 | |
Ahalleri_Araha.32468s0001.3 Araha.32468s0001.3 PAC:28844398 |
Low | No | 1112 | Get ORF Coding potential... Type: noncoding Potential: -0.844 Folding energies... MFEI: -19.928 AMFE: -0.573 GC content %: 34.802 |
Transcript alias | Database | Version | Hit | Evalue |
---|---|---|---|---|
Ahalleri_Araha.32468s0001.2 | RepBase (RepeatMasker) | 2014-01-31 | MuDR-5_EPa | |
Ahalleri_Araha.32468s0001.3 | RepBase (RepeatMasker) | 2014-01-31 | MuDR-5_EPa | |
Ahalleri_Araha.32468s0001.1 | RepBase (RepeatMasker) | 2014-01-31 | MuDR-5_EPa |