Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
---|---|---|---|---|---|---|---|
Ahalleri_Araha.58822s0002 Araha.58822s0002 |
Scaffold58822 | 5939 | 7096 | Phytozome | [[Species:|]]"Species:" cannot be used as a page name in this wiki. | Coding? No |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
---|---|---|---|---|---|
Ahalleri_Araha.58822s0002.1 Araha.58822s0002.1 PAC:28852270 |
Low | Yes | 952 | Get ORF Coding potential... Type: noncoding Potential: -1.107 Folding energies... MFEI: -25.945 AMFE: -0.694 GC content %: 37.395 |
Transcript alias | Database | Version | Hit | Evalue |
---|---|---|---|---|
Ahalleri_Araha.58822s0002.1 | Rfam | 11.0 | mir-598 | 0.0073 |