Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
---|---|---|---|---|---|---|---|
Ahalleri_Araha.5988s0002 Araha.5988s0002 |
Scaffold5988 | 5223 | 7012 | Phytozome | [[Species:|]]"Species:" cannot be used as a page name in this wiki. | Coding? No |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
---|---|---|---|---|---|
Ahalleri_Araha.5988s0002.1 Araha.5988s0002.1 PAC:28860552 |
High | No | 595 | Get ORF Coding potential... Type: noncoding Potential: -0.999 Folding energies... MFEI: -27.345 AMFE: -0.614 GC content %: 44.538 | |
Ahalleri_Araha.5988s0002.2 Araha.5988s0002.2 PAC:28860553 |
High | No | 837 | Get ORF Coding potential... Type: noncoding Potential: -1.122 Folding energies... MFEI: -26.296 AMFE: -0.624 GC content %: 42.174 | |
Ahalleri_Araha.5988s0002.3 Araha.5988s0002.3 PAC:28860554 |
High | No | 558 | Get ORF Coding potential... Type: noncoding Potential: -1.173 Folding energies... MFEI: -24.749 AMFE: -0.531 GC content %: 46.595 |