Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
---|---|---|---|---|---|---|---|
Alyrata_474248 474248 |
scaffold_1 | 27082150 | 27082445 | Phytozome | v1.0 | Arabidopsis_lyrata | Coding? No |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
---|---|---|---|---|---|
Alyrata_474248 474248 PAC:16060837 |
Low | No | 296 | Get ORF Coding potential... Type: noncoding Potential: -1.570 Folding energies... MFEI: -19.358 AMFE: -0.503 GC content %: 38.514 |
Transcript alias | Database | Version | Hit | Evalue |
---|---|---|---|---|
Alyrata_474248 | RepBase (RepeatMasker) | 2014-01-31 | Vandal12 |