Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
---|---|---|---|---|---|---|---|
Alyrata_930483 930483 |
scaffold_3 | 11420661 | 11421011 | Phytozome | v1.0 | Arabidopsis_lyrata | Coding? No |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
---|---|---|---|---|---|
Alyrata_930483 930483 PAC:16040944 |
Low | No | 351 | Get ORF Coding potential... Type: noncoding Potential: -0.593 Folding energies... MFEI: -16.866 AMFE: -0.448 GC content %: 37.607 |
Transcript alias | Database | Version | Hit | Evalue |
---|---|---|---|---|
Alyrata_930483 | SwissProt | 2015-06-01 | Q9SJ06 | 8.0e-21 |