Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
---|---|---|---|---|---|---|---|
Alyrata_933231 933231 |
scaffold_4 | 12178680 | 12178896 | Phytozome | v1.0 | Arabidopsis_lyrata | Coding? No |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
---|---|---|---|---|---|
Alyrata_933231 933231 PAC:16060417 |
Low | No | 217 | Get ORF Coding potential... Type: noncoding Potential: -0.236 Folding energies... MFEI: -22.120 AMFE: -0.585 GC content %: 37.788 |
Transcript alias | Database | Version | Hit | Evalue |
---|---|---|---|---|
Alyrata_933231 | SwissProt | 2015-06-01 | Q9ZVP2 | 2.0e-14 |