Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
---|---|---|---|---|---|---|---|
Alyrata_934328 934328 |
scaffold_4 | 17566002 | 17566428 | Phytozome | v1.0 | Arabidopsis_lyrata | Coding? No |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
---|---|---|---|---|---|
Alyrata_934328 934328 PAC:16043199 |
Low | No | 319 | Get ORF Coding potential... Type: noncoding Potential: -0.571 Folding energies... MFEI: -23.730 AMFE: -0.601 GC content %: 39.498 |
Transcript alias | Database | Version | Hit | Evalue |
---|---|---|---|---|
Alyrata_934328 | SwissProt | 2015-06-01 | Q940J9 | 5.0e-15 |