Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
---|---|---|---|---|---|---|---|
Athaliana_AT1G02160 AT1G02160 |
Chr1 | 410748 | 411597 | Phytozome | TAIR10 | Arabidopsis_thaliana | Coding? No |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
---|---|---|---|---|---|
Athaliana_AT1G02160.1 AT1G02160.1 PAC:19656439 |
Low | No | 485 | Get ORF Coding potential... Type: noncoding Potential: -0.970 Folding energies... MFEI: -24.845 AMFE: -0.585 GC content %: 42.474 | |
Athaliana_AT1G02160.2 AT1G02160.2 PAC:19656438 |
High | No | 567 | Get ORF Coding potential... Type: noncoding Potential: -0.825 Folding energies... MFEI: -24.656 AMFE: -0.595 GC content %: 41.446 |
Transcript alias | Database | Version | Hit | Evalue |
---|---|---|---|---|
Athaliana_AT1G02160.1 | SwissProt | 2015-06-01 | P38824 | 5.0e-4 |