GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Athaliana_AT1G10657 AT1G10657	Chr1	3530467	3531842	Phytozome	TAIR10	Arabidopsis_thaliana	Coding? Yes

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Athaliana_AT1G10657.2 AT1G10657.2 PAC:19651921	High	No	811		Get ORF Coding potential... Type: noncoding Potential: -1.058 Folding energies... MFEI: -22.885 AMFE: -0.617 GC content %: 37.115
Athaliana_AT1G10657.3 AT1G10657.3 PAC:19651922	High	No	893		Get ORF Coding potential... Type: noncoding Potential: -1.068 Folding energies... MFEI: -22.934 AMFE: -0.628 GC content %: 36.506
Athaliana_AT1G10657.4 AT1G10657.4 PAC:19651920	High	No	755		Get ORF Coding potential... Type: noncoding Potential: -1.050 Folding energies... MFEI: -22.675 AMFE: -0.625 GC content %: 36.291

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).