GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Athaliana_AT1G17090 AT1G17090	Chr1	5842216	5844283	Phytozome	TAIR10	Arabidopsis_thaliana	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Athaliana_AT1G17090.1 AT1G17090.1 PAC:19649702	High	No	667		Get ORF Coding potential... Type: noncoding Potential: -0.303 Folding energies... MFEI: -23.988 AMFE: -0.678 GC content %: 35.382
Athaliana_AT1G17090.2 AT1G17090.2 PAC:19649703	High	No	830		Get ORF Coding potential... Type: noncoding Potential: -0.361 Folding energies... MFEI: -24.867 AMFE: -0.664 GC content %: 37.470

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).