GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Athaliana_AT1G19396 AT1G19396	Chr1	6709778	6711788	Phytozome	TAIR10	Arabidopsis_thaliana	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Athaliana_AT1G19396.1 AT1G19396.1 PAC:19650230	High	No	470		Get ORF Coding potential... Type: noncoding Potential: -1.403 Folding energies... MFEI: -24.681 AMFE: -0.630 GC content %: 39.149
Athaliana_AT1G19396.2 AT1G19396.2 PAC:19650228	High	No	412		Get ORF Coding potential... Type: noncoding Potential: -1.416 Folding energies... MFEI: -27.354 AMFE: -0.727 GC content %: 37.621
Athaliana_AT1G19396.3 AT1G19396.3 PAC:19650229	High	No	476		Get ORF Coding potential... Type: noncoding Potential: -1.403 Folding energies... MFEI: -24.475 AMFE: -0.626 GC content %: 39.076

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).