GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Athaliana_AT1G25098 AT1G25098	Chr1	8812803	8814798	Phytozome	TAIR10	Arabidopsis_thaliana	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Athaliana_AT1G25098.1 AT1G25098.1	High	No	740		Get ORF Coding potential... Type: noncoding Potential: -0.705 Folding energies... MFEI: -21.027 AMFE: -0.533 GC content %: 39.459
Athaliana_AT1G25098.2 AT1G25098.2	High	No	1533		Get ORF Coding potential... Type: noncoding Potential: -1.043 Folding energies... MFEI: -19.354 AMFE: -0.559 GC content %: 34.637

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).