GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Athaliana_AT1G25275 AT1G25275	Chr1	8860671	8861364	Phytozome	TAIR10	Arabidopsis_thaliana	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Athaliana_AT1G25275.1 AT1G25275.1 PAC:19657893	High	No	481		Get ORF Coding potential... Type: noncoding Potential: -1.024 Folding energies... MFEI: -25.177 AMFE: -0.618 GC content %: 40.748
Athaliana_AT1G25275.2 AT1G25275.2 PAC:19657894	High	No	456		Get ORF Coding potential... Type: noncoding Potential: -1.018 Folding energies... MFEI: -25.044 AMFE: -0.624 GC content %: 40.132
Athaliana_AT1G25275.3 AT1G25275.3 PAC:19657892	High	No	511		Get ORF Coding potential... Type: noncoding Potential: -1.030 Folding energies... MFEI: -24.795 AMFE: -0.600 GC content %: 41.292

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).