GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Athaliana_AT1G30974 AT1G30974	Chr1	11046969	11047816	Phytozome	TAIR10	Arabidopsis_thaliana	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Athaliana_AT1G30974.1 AT1G30974.1 PAC:19654545	High	No	357		Get ORF Coding potential... Type: noncoding Potential: -0.935 Folding energies... MFEI: -19.356 AMFE: -0.566 GC content %: 34.174
Athaliana_AT1G30974.2 AT1G30974.2 PAC:19654546	High	No	437		Get ORF Coding potential... Type: noncoding Potential: -1.211 Folding energies... MFEI: -21.716 AMFE: -0.582 GC content %: 37.300

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).