Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
---|---|---|---|---|---|---|---|
Athaliana_AT1G32570 AT1G32570 |
Chr1 | 11776765 | 11777557 | Phytozome | TAIR10 | Arabidopsis_thaliana | Coding? No |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
---|---|---|---|---|---|
Athaliana_AT1G32570.1 AT1G32570.1 PAC:19656165 |
Low | No | 377 | Get ORF Coding potential... Type: noncoding Potential: -0.040 Folding energies... MFEI: -28.568 AMFE: -0.637 GC content %: 44.828 | |
Athaliana_AT1G32570.2 AT1G32570.2 PAC:19656166 |
Low | No | 535 | Get ORF Coding potential... Type: noncoding Potential: -0.264 Folding energies... MFEI: -27.065 AMFE: -0.630 GC content %: 42.991 |
Transcript alias | Database | Version | Hit | Evalue |
---|---|---|---|---|
Athaliana_AT1G32570.1 | SwissProt | 2015-06-01 | Q03251 | 6.0e-10 |
Athaliana_AT1G32570.2 | SwissProt | 2015-06-01 | Q05966 | 7.0e-10 |