Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
---|---|---|---|---|---|---|---|
Athaliana_AT1G38140 AT1G38140 |
Chr1 | 14300842 | 14302929 | Phytozome | TAIR10 | Arabidopsis_thaliana | Coding? No |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
---|---|---|---|---|---|
Athaliana_AT1G38140.1 AT1G38140.1 |
Low | No | 2088 | Get ORF Coding potential... Type: noncoding Potential: -0.990 Folding energies... MFEI: -25.728 AMFE: -0.648 GC content %: 39.703 |
Transcript alias | Database | Version | Hit | Evalue |
---|---|---|---|---|
Athaliana_AT1G38140.1 | RepBase (RepeatMasker) | 2014-01-31 | ATENSPM9 | |
Athaliana_AT1G38140.1 | SwissProt | 2015-06-01 | Q9XEC1 | 1.0e-4 |