Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
---|---|---|---|---|---|---|---|
Athaliana_AT1G38416 AT1G38416 |
Chr1 | 14462414 | 14463247 | Phytozome | TAIR10 | Arabidopsis_thaliana | Coding? No |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
---|---|---|---|---|---|
Athaliana_AT1G38416.1 AT1G38416.1 |
Low | No | 834 | Get ORF Coding potential... Type: noncoding Potential: -0.478 Folding energies... MFEI: -26.139 AMFE: -0.623 GC content %: 41.966 |
Transcript alias | Database | Version | Hit | Evalue |
---|---|---|---|---|
Athaliana_AT1G38416.1 | RepBase (RepeatMasker) | 2014-01-31 | Athila5_I-int | |
Athaliana_AT1G38416.1 | NONCODE | 3 | NONATHT000394 |