Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
---|---|---|---|---|---|---|---|
Athaliana_AT1G53687 AT1G53687 |
Chr1 | 20041518 | 20041734 | Phytozome | TAIR10 | Arabidopsis_thaliana | Coding? No |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
---|---|---|---|---|---|
Athaliana_AT1G53687.1 AT1G53687.1 |
Low | Yes | 217 | Get ORF Coding potential... Type: noncoding Potential: -1.081 Folding energies... MFEI: -33.226 AMFE: -0.924 GC content %: 35.944 |
Transcript alias | Database | Version | Hit | Evalue |
---|---|---|---|---|
Athaliana_AT1G53687.1 | miRBase | 20.0 | ptc-miR169u-5p | 0.023 |
Athaliana_AT1G53687.1 | miRBase | 20.0 | mtr-miR169f | 6.0e-4 |
Athaliana_AT1G53687.1 | miRBase | 20.0 | osa-miR169b | 2.0e-4 |
Athaliana_AT1G53687.1 | miRBase | 20.0 | vvi-miR169g | 5.0e-5 |
Athaliana_AT1G53687.1 | miRBase | 20.0 | sbi-miR169g | 6.0e-4 |
Athaliana_AT1G53687.1 | miRBase | 20.0 | mes-miR169q | 6.0e-4 |
Athaliana_AT1G53687.1 | miRBase | 20.0 | mtr-miR169i | 6.0e-4 |
Athaliana_AT1G53687.1 | miRBase | 20.0 | ppe-miR169a | 2.0e-4 |
Athaliana_AT1G53687.1 | miRBase | 20.0 | ath-miR169j | 6.0e-4 |
Athaliana_AT1G53687.1 | miRBase | 20.0 | lus-miR169b | 6.0e-4 |
... further results