GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Athaliana_AT1G56612 AT1G56612	Chr1	21214118	21215406	Phytozome	TAIR10	Arabidopsis_thaliana	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Athaliana_AT1G56612.1 AT1G56612.1	High	No	803		Get ORF Coding potential... Type: noncoding Potential: -1.202 Folding energies... MFEI: -26.999 AMFE: -0.614 GC content %: 43.960
Athaliana_AT1G56612.2 AT1G56612.2	High	No	1261		Get ORF Coding potential... Type: noncoding Potential: -1.233 Folding energies... MFEI: -26.051 AMFE: -0.637 GC content %: 40.919
Athaliana_AT1G56612.3 AT1G56612.3	High	No	715		Get ORF Coding potential... Type: noncoding Potential: -1.191 Folding energies... MFEI: -23.608 AMFE: -0.616 GC content %: 38.321

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).