GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Athaliana_AT1G57540 AT1G57540	Chr1	21310329	21311502	Phytozome	TAIR10	Arabidopsis_thaliana	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Athaliana_AT1G57540.1 AT1G57540.1 PAC:19650481	High	No	512		Get ORF Coding potential... Type: noncoding Potential: -0.707 Folding energies... MFEI: -26.719 AMFE: -0.595 GC content %: 44.922
Athaliana_AT1G57540.2 AT1G57540.2 PAC:19650482	High	No	658		Get ORF Coding potential... Type: noncoding Potential: -0.780 Folding energies... MFEI: -23.769 AMFE: -0.609 GC content %: 39.058
Athaliana_AT1G57540.3 AT1G57540.3 PAC:19650483	High	No	508		Get ORF Coding potential... Type: noncoding Potential: -0.705 Folding energies... MFEI: -26.476 AMFE: -0.595 GC content %: 44.488

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).