GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Athaliana_AT1G58590 AT1G58590	Chr1	21742944	21744075	Phytozome	TAIR10	Arabidopsis_thaliana	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Athaliana_AT1G58590.1 AT1G58590.1	High	No	402		Get ORF Coding potential... Type: noncoding Potential: -1.200 Folding energies... MFEI: -22.438 AMFE: -0.586 GC content %: 38.308
Athaliana_AT1G58590.2 AT1G58590.2	High	No	789		Get ORF Coding potential... Type: noncoding Potential: -1.248 Folding energies... MFEI: -21.521 AMFE: -0.629 GC content %: 34.220

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).