GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Athaliana_AT1G65483 AT1G65483	Chr1	24342483	24343731	Phytozome	TAIR10	Arabidopsis_thaliana	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Athaliana_AT1G65483.1 AT1G65483.1 PAC:19658271	High	No	1182		Get ORF Coding potential... Type: noncoding Potential: -0.963 Folding energies... MFEI: -22.809 AMFE: -0.643 GC content %: 35.448
Athaliana_AT1G65483.2 AT1G65483.2 PAC:19658272	High	No	655		Get ORF Coding potential... Type: noncoding Potential: -0.837 Folding energies... MFEI: -22.840 AMFE: -0.591 GC content %: 38.626

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).