GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Athaliana_AT1G67910 AT1G67910	Chr1	25471288	25472440	Phytozome	TAIR10	Arabidopsis_thaliana	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Athaliana_AT1G67910.1 AT1G67910.1 PAC:19654769	High	No	672		Get ORF Coding potential... Type: noncoding Potential: -0.869 Folding energies... MFEI: -22.307 AMFE: -0.568 GC content %: 39.286
Athaliana_AT1G67910.2 AT1G67910.2 PAC:19654770	High	No	1059		Get ORF Coding potential... Type: noncoding Potential: -0.946 Folding energies... MFEI: -21.086 AMFE: -0.619 GC content %: 34.089

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).