GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Athaliana_AT1G75295 AT1G75295	Chr1	28254217	28257215	Phytozome	TAIR10	Arabidopsis_thaliana	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Athaliana_AT1G75295.1 AT1G75295.1	High	No	1327		Get ORF Coding potential... Type: noncoding Potential: -1.214 Folding energies... MFEI: -25.433 AMFE: -0.617 GC content %: 41.220
Athaliana_AT1G75295.2 AT1G75295.2	High	No	1824		Get ORF Coding potential... Type: noncoding Potential: -1.238 Folding energies... MFEI: -25.609 AMFE: -0.619 GC content %: 41.337
Athaliana_AT1G75295.3 AT1G75295.3	High	No	1155		Get ORF Coding potential... Type: noncoding Potential: -1.221 Folding energies... MFEI: -26.424 AMFE: -0.614 GC content %: 43.030

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).