GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Athaliana_AT1G79075 AT1G79075	Chr1	29745939	29746842	Phytozome	TAIR10	Arabidopsis_thaliana	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Athaliana_AT1G79075.1 AT1G79075.1	High	No	290		Get ORF Coding potential... Type: noncoding Potential: -1.211 Folding energies... MFEI: -23.379 AMFE: -0.622 GC content %: 37.586
Athaliana_AT1G79075.2 AT1G79075.2	High	No	804		Get ORF Coding potential... Type: noncoding Potential: -1.236 Folding energies... MFEI: -23.669 AMFE: -0.700 GC content %: 33.830

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).