GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Athaliana_AT2G04800 AT2G04800	Chr2	1687196	1687817	Phytozome	TAIR10	Arabidopsis_thaliana	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Athaliana_AT2G04800.1 AT2G04800.1 PAC:19642611	High	No	306		Get ORF Coding potential... Type: noncoding Potential: -0.689 Folding energies... MFEI: -22.647 AMFE: -0.582 GC content %: 38.889
Athaliana_AT2G04800.2 AT2G04800.2 PAC:19642612	High	No	507		Get ORF Coding potential... Type: noncoding Potential: -0.797 Folding energies... MFEI: -22.584 AMFE: -0.666 GC content %: 33.925

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).