GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Athaliana_AT2G05510 AT2G05510	Chr2	2015706	2016749	Phytozome	TAIR10	Arabidopsis_thaliana	Coding? Yes

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Athaliana_AT2G05510.2 AT2G05510.2 PAC:19638408	High	No	615		Get ORF Coding potential... Type: noncoding Potential: -0.456 Folding energies... MFEI: -27.333 AMFE: -0.614 GC content %: 44.553
Athaliana_AT2G05510.3 AT2G05510.3 PAC:19638412	High	No	572		Get ORF Coding potential... Type: noncoding Potential: -0.604 Folding energies... MFEI: -26.294 AMFE: -0.614 GC content %: 42.832
Athaliana_AT2G05510.4 AT2G05510.4 PAC:19638410	High	No	679		Get ORF Coding potential... Type: noncoding Potential: -0.179 Folding energies... MFEI: -26.524 AMFE: -0.577 GC content %: 45.950
Athaliana_AT2G05510.5 AT2G05510.5 PAC:19638409	High	No	629		Get ORF Coding potential... Type: noncoding Potential: -0.594 Folding energies... MFEI: -26.582 AMFE: -0.612 GC content %: 43.402
Athaliana_AT2G05510.6 AT2G05510.6 PAC:19638411	High	No	605		Get ORF Coding potential... Type: noncoding Potential: -0.547 Folding energies... MFEI: -25.785 AMFE: -0.617 GC content %: 41.818

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).