Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
---|---|---|---|---|---|---|---|
Athaliana_AT2G33847 AT2G33847 |
Chr2 | 14318964 | 14320591 | Phytozome | TAIR10 | Arabidopsis_thaliana | Coding? No |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
---|---|---|---|---|---|
Athaliana_AT2G33847.1 AT2G33847.1 PAC:19641773 |
Low | No | 667 | Get ORF Coding potential... Type: noncoding Potential: -1.181 Folding energies... MFEI: -26.222 AMFE: -0.573 GC content %: 45.727 | |
Athaliana_AT2G33847.2 AT2G33847.2 PAC:19641774 |
Low | No | 1504 | Get ORF Coding potential... Type: noncoding Potential: -1.270 Folding energies... MFEI: -26.250 AMFE: -0.670 GC content %: 39.162 |
Transcript alias | Database | Version | Hit | Evalue |
---|---|---|---|---|
Athaliana_AT2G33847.1 | SwissProt | 2015-06-01 | Q93ZJ3 | 2.0e-10 |
Athaliana_AT2G33847.2 | SwissProt | 2015-06-01 | Q93ZJ3 | 9.0e-8 |