GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Athaliana_AT2G35658 AT2G35658	Chr2	14990325	14990935	Phytozome	TAIR10	Arabidopsis_thaliana	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Athaliana_AT2G35658.1 AT2G35658.1 PAC:19642819	High	No	500		Get ORF Coding potential... Type: noncoding Potential: -1.447 Folding energies... MFEI: -19.320 AMFE: -0.462 GC content %: 41.800
Athaliana_AT2G35658.2 AT2G35658.2 PAC:19642818	High	No	606		Get ORF Coding potential... Type: noncoding Potential: -1.453 Folding energies... MFEI: -20.248 AMFE: -0.505 GC content %: 40.099
Athaliana_AT2G35658.3 AT2G35658.3 PAC:19642820	High	No	439		Get ORF Coding potential... Type: noncoding Potential: -1.441 Folding energies... MFEI: -19.613 AMFE: -0.458 GC content %: 42.825

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).