GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Athaliana_AT2G35738 AT2G35738	Chr2	15023559	15025465	Phytozome	TAIR10	Arabidopsis_thaliana	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Athaliana_AT2G35738.1 AT2G35738.1	High	No	1075		Get ORF Coding potential... Type: noncoding Potential: -1.223 Folding energies... MFEI: -29.870 AMFE: -0.645 GC content %: 46.325
Athaliana_AT2G35738.2 AT2G35738.2	High	No	655		Get ORF Coding potential... Type: noncoding Potential: -0.734 Folding energies... MFEI: -21.817 AMFE: -0.650 GC content %: 33.587
Athaliana_AT2G35738.3 AT2G35738.3	High	No	1044		Get ORF Coding potential... Type: noncoding Potential: -1.220 Folding energies... MFEI: -30.077 AMFE: -0.645 GC content %: 46.647

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).