GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Athaliana_AT2G41231 AT2G41231	Chr2	17195292	17195915	Phytozome	TAIR10	Arabidopsis_thaliana	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Athaliana_AT2G41231.1 AT2G41231.1 PAC:19639810	High	No	335		Get ORF Coding potential... Type: noncoding Potential: -0.852 Folding energies... MFEI: -20.657 AMFE: -0.501 GC content %: 41.194
Athaliana_AT2G41231.2 AT2G41231.2 PAC:19639811	High	No	528		Get ORF Coding potential... Type: noncoding Potential: -1.140 Folding energies... MFEI: -25.922 AMFE: -0.606 GC content %: 42.803

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).